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Genomic and Transcriptomic Landscape of Tumor Clonal Evolution in Cholangiocarcinoma.
胆管癌肿瘤克隆进化的基因组和转录组学景观。
- 影响因子:3.60
- DOI:10.3389/fgene.2020.00195
- 作者列表:"Chen G","Cai Z","Dong X","Zhao J","Lin S","Hu X","Liu FE","Liu X","Zhang H
- 发表时间:2020-03-13
Abstract
:Cholangiocarcinoma remained a severe threat to human health. Deciphering the genomic and/or transcriptomic profiles of tumor has been proved to be a promising strategy for exploring the mechanism of tumorigenesis and development, which could also provide valuable insights into Cholangiocarcinoma. However, little knowledge has been obtained regarding to how the alteration among different omics levels is connected. Here, using whole exome sequencing and transcriptome sequencing, we performed a thorough evaluation for the landscape of genome and transcriptome in cholangiocarcinoma and illustrate the alteration of tumor on different biological levels. Meanwhile, we also identified the clonal structure of each included tumor sample and discovered different clonal evolution patterns related to patients' survival. Furthermore, we extracted subnetworks that were greatly influenced by tumor clonal/subclonal mutations or transcriptome change. The topology relationship between genes affected by genomic/transcriptomic changes in biological interaction networks revealed that alteration of genome and transcriptome was highly correlated, and somatic mutations located on important genes might affect the expression of numerous genes in close range.
摘要
: 胆管癌仍然是对人类健康的严重威胁。破译肿瘤的基因组和/或转录组谱已被证明是探索肿瘤发生发展机制的一种很有前途的策略,这也可以为胆管癌提供有价值的见解。然而,关于不同组学水平之间的改变如何联系的知识很少。在这里,使用全外显子组测序和转录组测序,我们对胆管癌的基因组和转录组进行了彻底的评价,并说明了肿瘤在不同生物学水平上的改变。同时,我们还鉴定了每个纳入肿瘤样本的克隆结构,发现了与患者生存相关的不同克隆进化模式。此外,我们提取了受肿瘤克隆/亚克隆突变或转录组变化影响较大的子网络。生物相互作用网络中基因组/转录组变化影响的基因之间的拓扑关系揭示了基因组和转录组的改变高度相关,位于重要基因上的体细胞突变可能会在近距离内影响众多基因的表达。
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