Cardiac MR segmentation based on sequence propagation by deep learning.

基于深度学习序列传播的心脏MR分割 [j].

  • 影响因子:3.02
  • DOI:10.1371/journal.pone.0230415
  • 作者列表:"Luo C","Shi C","Li X","Gao D
  • 发表时间:2020-04-09

:Accurate segmentation of myocardial in cardiac MRI (magnetic resonance image) is key to effective rapid diagnosis and quantitative pathology analysis. However, a low-quality CMR (cardiac magnetic resonance) image with a large amount of noise makes it extremely difficult to accurately and quickly manually segment the myocardial. In this paper, we propose a method for CMR segmentation based on U-Net and combined with image sequence information. The method can effectively segment from the top slice to the bottom slice of the CMR. During training, each input slice depends on the slice below it. In other words, the predicted segmentation result depends on the existing segmentation label of the previous slice. 3D sequence information is fully utilized. Our method was validated on the ACDC dataset, which included CMR images of 100 patients (1700 2D MRI). Experimental results show that our method can segment the myocardial quickly and efficiently and is better than the current state-of-the-art methods. When evaluating 340 CMR image, our model yielded an average dice score of 85.02 ± 0.15, which is much higher than the existing classical segmentation method(Unet, Dice score = 0.78 ± 0.3).


: 心脏MRI (磁共振图像) 中心肌的准确分割是有效快速诊断和定量病理分析的关键。然而,具有大量噪声的低质量CMR (心脏磁共振) 图像使得精确和快速地手动分割心肌极其困难。本文提出了一种基于U-Net并结合图像序列信息的CMR分割方法。该方法可以有效地从CMR的顶部切片分割到底部切片。在训练期间,每个输入切片取决于它下面的切片。换句话说,预测的分割结果取决于先前切片的现有分割标签。充分利用了3D序列信息。我们的方法在ACDC数据集上得到验证,其中包括100例患者的CMR图像 (1700 2D MRI)。实验结果表明,我们的方法可以快速有效地分割心肌,优于目前最先进的方法。在评估340幅CMR图像时,我们的模型得到的dice平均得分为85.02 ± 0.15,远高于现有的经典分割方法 (Unet,Dice得分 = 0.78 ± 0.3)。



来源期刊:European radiology
作者列表:["Delattre BMA","Boudabbous S","Hansen C","Neroladaki A","Hachulla AL","Vargas MI"]

METHODS:OBJECTIVES:The aim was to evaluate the image quality and sensitivity to artifacts of compressed sensing (CS) acceleration technique, applied to 3D or breath-hold sequences in different clinical applications from brain to knee. METHODS:CS with an acceleration from 30 to 60% and conventional MRI sequences were performed in 10 different applications in 107 patients, leading to 120 comparisons. Readers were blinded to the technique for quantitative (contrast-to-noise ratio or functional measurements for cardiac cine) and qualitative (image quality, artifacts, diagnostic findings, and preference) image analyses. RESULTS:No statistically significant difference in image quality or artifacts was found for each sequence except for the cardiac cine CS for one of both readers and for the wrist 3D proton density (PD)-weighted CS sequence which showed less motion artifacts due to the reduced acquisition time. The contrast-to-noise ratio was lower for the elbow CS sequence but not statistically different in all other applications. Diagnostic findings were similar between conventional and CS sequence for all the comparisons except for four cases where motion artifacts corrupted either the conventional or the CS sequence. CONCLUSIONS:The evaluated CS sequences are ready to be used in clinical daily practice except for the elbow application which requires a lower acceleration. The CS factor should be tuned for each organ and sequence to obtain good image quality. It leads to 30% to 60% acceleration in the applications evaluated in this study which has a significant impact on clinical workflow. KEY POINTS:• Clinical implementation of compressed sensing (CS) reduced scan times of at least 30% with only minor penalty in image quality and no change in diagnostic findings. • The CS acceleration factor has to be tuned separately for each organ and sequence to guarantee similar image quality than conventional acquisition. • At least 30% and up to 60% acceleration is feasible in specific sequences in clinical routine.

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作者列表:["Guo W","Liu H","Tan Z","Zhang X","Gao J","Zhang L","Guo H","Bai H","Cui W","Liu X","Wu X","Luo J","Qu Y"]

METHODS:BACKGROUND:The main surgical techniques for spontaneous basal ganglia hemorrhage include stereotactic aspiration, endoscopic aspiration, and craniotomy. However, credible evidence is still needed to validate the effect of these techniques. OBJECTIVE:To explore the long-term outcomes of the three surgical techniques in the treatment of spontaneous basal ganglia hemorrhage. METHODS:Five hundred and sixteen patients with spontaneous basal ganglia hemorrhage who received stereotactic aspiration, endoscopic aspiration, or craniotomy were reviewed retrospectively. Six-month mortality and the modified Rankin Scale score were the primary and secondary outcomes, respectively. A multivariate logistic regression model was used to assess the effects of different surgical techniques on patient outcomes. RESULTS:For the entire cohort, the 6-month mortality in the endoscopic aspiration group was significantly lower than that in the stereotactic aspiration group (odds ratio (OR) 4.280, 95% CI 2.186 to 8.380); the 6-month mortality in the endoscopic aspiration group was lower than that in the craniotomy group, but the difference was not significant (OR=1.930, 95% CI 0.835 to 4.465). A further subgroup analysis was stratified by hematoma volume. The mortality in the endoscopic aspiration group was significantly lower than in the stereotactic aspiration group in the medium (≥40-<80 mL) (OR=2.438, 95% CI 1.101 to 5.402) and large hematoma subgroup (≥80 mL) (OR=66.532, 95% CI 6.345 to 697.675). Compared with the endoscopic aspiration group, a trend towards increased mortality was observed in the large hematoma subgroup of the craniotomy group (OR=8.721, 95% CI 0.933 to 81.551). CONCLUSION:Endoscopic aspiration can decrease the 6-month mortality of spontaneous basal ganglia hemorrhage, especially in patients with a hematoma volume ≥40 mL.

作者列表:["Meng L","Zhao D","Yang Z","Wang B"]

METHODS:OBJECTIVE:The primary purpose of this study was to evaluate the effectiveness of a three-dimensional (3D) software tool (smart planes) for displaying fetal brain planes, and the secondary purpose was to evaluate its accuracy in performing automatic measurements. MATERIAL AND METHODS:This prospective study included singleton fetuses with a gestational age (GA) greater than 18 weeks. Transabdominal two-dimensional ultrasound (2DUS) and 3D smart planes images were respectively used to obtain the basic planes of the fetal brain, with five parameters measured. The images, by either two-dimensional (2D) manual or 3D automatic operation, were reviewed by two experienced sonographers. The agreements between two measurements were analyzed. RESULTS:A total of 226 cases were included. The rates of successful detection by automatic display were as high as 80%. There was substantial agreement between the measurements of the biparietal diameter, head circumference and transcerebellar diameter, but poor agreement between the measurements of cisterna magna and lateral ventricle width. CONCLUSIONS:Smart Planes might be valuable for the rapid evaluation of fetal brain, because it simplifies the evaluation process. However, the technology requires improvement. In addition, this technology cannot replace the conventional manual US scans; it can only be used as an additional approach.

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